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compcodeR RNAseq facts simulation, differential expression Investigation and effectiveness comparison of differential expression procedures.

DEXUS is really a Bioconductor package deal that identifies differentially expressed genes in RNA-Seq info underneath all feasible study patterns like research without the need of replicates, with out sample groups, and with unidentified situations.

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Splicing Categorical – a software program suite for substitute splicing analysis applying upcoming-generation sequencing details.

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RNAeXpress RNA-Specific was developed like a user helpful Resolution to extract and annotate biologically essential transcripts from next era RNA sequencing info.

seq2HLA is undoubtedly see page an annotation Software for acquiring a person's HLA class I and II form and expression applying common NGS RNA-Seq details in fastq structure. It comprises mapping RNA-Seq reads against a reference database of HLA alleles employing bowtie, analyzing and reporting HLA form, confidence rating and locus-distinct expression stage. This Resource is formulated in Python and R. It is available as console tool or Galaxy module.

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